The MATCH-UP Program

Mutating, Aligning and Transforming Coordinates Harmonizing Unidentical Proteins

MATCH-UP is a tool to superpose and make proteins similar.

  • Reads two or more PDB files
  • Performs a sequence alignment to generate superposed proteins
  • Makes proteins similar by mutating and deleting residues
  • Outputs standard pdb files compatible for flexible protein docking with FITTED

More details about the MATCH-UP program can be found in the references.